Recent Publications

Establishing African genomics and bioinformatics programs through annual regional workshops. Sharaf, Abdoallah, Lucky Tendani Nesengani, Ichrak Hayah, Josiah Ochieng Kuja, Sinebongo Mdyogolo, Taiwo Crossby Omotoriogun, Blessing Adanta Odogwu et al. Nature Genetics 56, no. 8 (2024): 1556-1565.

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics. Mc Cartney, Ann M., Giulio Formenti, Alice Mouton, Diego De Panis, Luísa S. Marins, Henrique G. Leitão, Genevieve Diedericks et al. npj Biodiversity 3, no. 1 (2024): 28.

Plan de Gestion des Données: PEPR ATLASea: Atlas des génomes marins. Corre, Erwan, Jean-Marc Aury, Line Le Gall, Patrick Wincker, and Hugues Roest Crollius. PhD diss., Zenodo, 2024.

The Catalan initiative for the Earth BioGenome Project: contributing local data to global biodiversity genomics. Corominas, Montserrat, Tomàs Marquès-Bonet, Miquel A. Arnedo, Mònica Bayés, Jordina Belmonte, Hector Escrivà, Rosa Fernández et al. NAR Genomics and Bioinformatics 6, no. 3 (2024): lqae075.

The contours of evolution: In defence of Darwin's tree of life paradigm. van der Gulik, Peter TS, Wouter D. Hoff, and Dave Speijer. BioEssays 46, no. 5 (2024): 2400012.

Toward genome assemblies for all marine vertebrates: current landscape and challenges. de Jong, Emma, Lara Parata, Philipp E. Bayer, Shannon Corrigan, and Richard J. Edwards. GigaScience 13 (2024): giad119.

Open Institute of the African BioGenome Project: Bridging the gap in African biodiversity genomics and bioinformatics. Sharaf, Abdoallah, Charlotte C. Ndiribe, Taiwo Crossby Omotoriogun, Linelle Abueg, Bouabid Badaou, Fatu J. Badiane Markey, Girish Beedessee et al. (2023).

California Conservation Genomics Project Third Year Annual Report. Shaffer, Howard B., and Erin Toffelmier. (2022).

Initiation of the primate genome project. Wu, Dong-Dong, Xiao-Guang Qi, Li Yu, Ming Li, Zhi-Jin Liu, Anne D. Yoder, Christian Roos et al. Zoological research 43, no. 2 (2022): 147.

Sequence locally, think globally: the Darwin Tree of Life Project. Darwin Tree of Life Project Consortium. Proceedings of the National Academy of Sciences 119, no. 4 (2022): e2115642118.

Landscape genomics to enable conservation actions: the California Conservation Genomics Project. Shaffer, H. Bradley, Erin Toffelmier, Russ B. Corbett-Detig, Merly Escalona, Bjorn Erickson, Peggy Fiedler, Mark Gold et al. Journal of Heredity 113, no. 6 (2022): 577-588.

Squalomix: shark and ray genome analysis consortium and its data sharing platform. Nishimura, Osamu, John Rozewicki, Kazuaki Yamaguchi, Kaori Tatsumi, Yuta Ohishi, Tazro Ohta, Masaru Yagura et al. F1000Research 11 (2022).

Threatened Species Initiative: Empowering conservation action using genomic resources. Hogg, Carolyn J., Kym Ottewell, Peter Latch, Maurizio Rossetto, James Biggs, Andrew Gilbert, Sarah Richmond, and Katherine Belov. Proceedings of the National Academy of Sciences 119, no. 4 (2022): e2115643118.

Darwinian genomics and diversity in the tree of life. Stephan, Taylorlyn, Shawn M. Burgess, Hans Cheng, Charles G. Danko, Clare A. Gill, Erich D. Jarvis, Klaus-Peter Koepfli et al. Proceedings of the National Academy of Sciences 119, no. 4 (2022): e2115644119.

Towards complete and error-free genome assemblies of all vertebrate species. Rhie, Arang, Shane A. McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva et al. Nature 592, no. 7856 (2021): 737-746.

The USDA-ARS Ag100Pest initiative: high-quality genome assemblies for agricultural pest arthropod research. Childers, Anna K., Scott M. Geib, Sheina B. Sim, Monica F. Poelchau, Brad S. Coates, Tyler J. Simmonds, Erin D. Scully et al. Insects 12, no. 7 (2021): 626.

The aquatic symbiosis genomics project: probing the evolution of symbiosis across the tree of life. McKenna, Victoria, John M. Archibald, Roxanne Beinart, Michael N. Dawson, Ute Hentschel, Patrick J. Keeling, Jose V. Lopez et al. Wellcome Open Research 6, no. 254 (2021): 254.

Dense sampling of bird diversity increases power of comparative genomics. Feng, Shaohong, Josefin Stiller, Yuan Deng, Joel Armstrong, Q. I. Fang, Andrew Hart Reeve, Duo Xie et al. Nature 587, no. 7833 (2020): 252-257.

Establishing a national initiative for Earth BioGenome Norway (EBP-Nor). Jakobsen, Kjetill S. PhD diss., The Arctic University of Norway, 2020.

Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K). Fan, Guangyi, Yue Song, Liandong Yang, Xiaoyun Huang, Suyu Zhang, Mengqi Zhang, Xianwei Yang et al. GigaScience 9, no. 8 (2020): giaa080.

Genomics of the first 100 Aspergilli. Kuo, A., R. Riley, S. Mondo, S. Haridas, A. Salamov, F. Korzeniewski, B. A. Simmons, S. Baker, M. Andersen, and I. Grigoriev. In 29th Fungal Genetics Conference. 2017.